NASC Stock Detail Page
NASC ID: N530989
Name: SALK_030989
ABRC stock number: SALK_030989
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_030989.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT5G12840.2 (at chr 5 pos 4053621 (W/4053573-4053621) on the TAIR10). The sequences' 1-49 bps mapped on the genome, 55-78 bps onto the T-DNA. Pools P 1, R 6, C 10 N 10. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO404473. SALKseq_030989.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G06656.1 (at chr 4 pos 3844248 (W/3844170-3844248) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 1, R 6, C 10 N 10. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO394454. SALKseq_030989.101 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G20045.1=P355 and AT5G20050.1=P355 (at chr 5 pos 6773356 (W/6773296-6773356) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 1, R 6, C 10 N 10. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO407810. SALKseq_030989.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G09930.1 (at chr 4 pos 6228589 (W/6228545-6228589) on the TAIR10). The sequences' 1-45 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 1, R 6, C 10 N 10. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO397796. SALKseq_030989.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G35926.1 (at chr 5 pos 14064124 (W/14064081-14064124) on the TAIR10). The sequences' 1-44 bps mapped on the genome, 54-77 bps onto the T-DNA. Pools P 1, R 6, C 10 N 10. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO401137.
Donation Date: 2001-01-12
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_030989
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_030989C.
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.